rs37189833 SNP Detail

Summary

• ID
  rs37189833
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131016257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACTTTGG GGACTAGGGA
  GTCTTGGTTT TGAAAAGCAT CCGTTGTTTT AAATTGCTTG CAGAGTGATT CATTCGAGAC
  AAACAGTAAA TGTCTTCATG TGTATGGAGG GAGTCGTCTT GAGAATTAGG TGGAAATGGA
  GGGGTCCCCA CCCCCTTGGA CCGTAATAAT GAACAGTATA TCCTGGGTGT GTCGGGCTTG
  Y
  TGAATGAGAG TTTGCAGCAC GCTGGCCGTT TGGAATATCC TGGTCCTGTG TAGAATCCTG
  CCATGGCTCT CTGCAGTGAA CTAAAACCAG CAGTAGTCCT TCAGGCCCCC TCCTGGCCTG
  GCTTCTGCTC ACCTCTCCAG TTCCTGTCTG GCTCTTTCTA TTGATGTTTT TTTTTTTTTT
  TTTCAAACAT GGTTTTGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51634211	NES14648977	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37189833					SNP	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634211	NES14648977	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131016257 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	within coordinates
Tssr31723	transcription start site region 31723	183 bp upstream
Tssr31724	transcription start site region 31724	1220 bp upstream
Tssr31725	transcription start site region 31725	1330 bp upstream