rs37190283 SNP Detail

Summary

• ID
  rs37190283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70701658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGAGTTC TCTCTTTTGT
  CTCCTAAGTT TTTATGACTA CAAAAATCAG TAGTATGTCC TGAAATAATC ATTAAGCTGT
  TTGAAAGTAT GACTGCTTGC CATGTAGATA CCATGGCTTG CTGAATAATC AGAAGAGGTG
  TGACTCTTAT TCTAAAATTT GTCACAAAAT GTCAAAATGA GAGACTCTGT AGGAACGAGT
  Y
  CTTGACAGAC AGCTCAAGGG GTTTTTTTCC TTTGTCTCAT TTCTACATGA AAGTAAATTT
  GAAATGATCT TTTTTATTAT AAGAGTAGAA ATACAGTTGG GTTTGAACTA TATGTTTTAA
  TGGCCACGGT TTTGTAAGAC ATTTGGTCCT TTGTTTTCCC AGTTATTACT CGATTGTAAT
  TTTATATCGC CAGCAATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676701	NES14820426	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37190283					SNP	C	C	T	C	C	C	T	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676701	NES14820426	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70701658 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1772 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1761 bp upstream
Igkj2	immunoglobulin kappa joining 2	1720 bp downstream
Igkj3	immunoglobulin kappa joining 3	1414 bp downstream
Igkj4	immunoglobulin kappa joining 4	1089 bp downstream
Igkj5	immunoglobulin kappa joining 5	751 bp downstream
Rr158	regulatory region 158	1277 bp proximal
Rr399684	regulatory region 399684	461 bp upstream
Rr399685	regulatory region 399685	873 bp upstream
Rr399686	regulatory region 399686	1837 bp upstream
Rr631809	regulatory region 631809	153 bp proximal
Rr631810	regulatory region 631810	967 bp proximal
Tssr56952	transcription start site region 56952	1823 bp downstream
Tssr56953	transcription start site region 56953	1127 bp downstream
Tssr56954	transcription start site region 56954	995 bp downstream
Tssr56955	transcription start site region 56955	774 bp downstream
Tssr56956	transcription start site region 56956	1134 bp upstream
Tssr56957	transcription start site region 56957	1756 bp upstream
Tssr56958	transcription start site region 56958	1803 bp upstream
Tssr56959	transcription start site region 56959	1821 bp upstream
Tssr56960	transcription start site region 56960	1844 bp upstream
Tssr56961	transcription start site region 56961	1858 bp upstream
Tssr56962	transcription start site region 56962	1866 bp upstream
Tssr56963	transcription start site region 56963	1915 bp upstream
Tssr56964	transcription start site region 56964	1930 bp upstream
Tssr56965	transcription start site region 56965	1936 bp upstream
Tssr56966	transcription start site region 56966	1947 bp upstream
Tssr56967	transcription start site region 56967	1962 bp upstream
Tssr56968	transcription start site region 56968	1986 bp upstream
Tssr61321	transcription start site region 61321	1808 bp downstream
Tssr61322	transcription start site region 61322	1973 bp downstream
Tssr61323	transcription start site region 61323	1988 bp downstream