rs3719160 SNP Detail

Summary

• ID
  rs3719160
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118085510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAACAACA ACAACAAAAT
  TAATTTTCAC ATAAGAACCA AACACGAAGA AAGAAATTAT TCTGCAATTC TTCCTCATTA
  CTCATCGGCA AGCTCCAGCC AGGCTAAGAA AGTTGATCTC AAATCACCAG CCTCCCACCC
  CAGCCCTCCA CCCCTCCAAA AGTTGCCCCA ACTGTTTTTT GGGGTTTGTT TGGGGTTTTT
  K
  TTTTGCCCCA AATGTTTTAG CTGGGATTTT AATTGGAGAG CCAGGCTTGC ATGGAAACCC
  TACCAGCCTA CCAGGAACTG GGATAAATGT TATCTGTGGC TGTATTTTGT TTTTTTTGTT
  TGTTTGTTTG TTTTTTTCTG CTGTTATTCC TATAACAAAG CTTAACTCTG AGAGATAAAG
  TAGAAATGAA CTAACACCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5095438	WI_WGS_7_108126280	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3719160					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118085510 () rs orientation: forward

Symbol	Name	Function Class
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	51 bp upstream
Tssr74438	transcription start site region 74438	630 bp upstream
Tssr74439	transcription start site region 74439	1249 bp downstream
Tssr74440	transcription start site region 74440	1966 bp downstream