rs3719440 SNP Detail

Summary

• ID
  rs3719440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161323657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAA GATATTGAGA AAAGATGCAG
  R
  AGGAAGTAAT GCACTGTTGA TTCGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J
ss5095719	WI_WGS_1_162673620	WI	MOUSE	f	SNP		A	G
ss145915239	ENSMUSSNP5381378	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J
rs3719440					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161323657 () rs orientation: forward

Symbol	Name	Function Class
Rr421810	regulatory region 421810	1423 bp distal
Tnfsf18	tumor necrosis factor (ligand) superfamily, member 18	within coordinates
Tssr9690	transcription start site region 9690	1432 bp downstream