rs37194441 SNP Detail

Summary

• ID
  rs37194441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:101690608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTTCCTA GACCACACAT
  TGGATGGGGA TCTCTGTCCA GCTCCAGGAG GATCCCAAAG GCCCTAGCTC ACAGGAGCAC
  CTACAATCAT GTTCGCATAG TCACATGTAT ATGAACACAT ACATGCATGT AATTAAAAAG
  TGTAAAAAAA AACCTTAAAG AATAATGTAT TTGAGCAGAT GACCTTCCTT CAATCTTTAT
  Y
  ATGAAGGTTG CAGACATACT TGCATTCCTT TTCTTCTAAA TGAGAAATCT AACCTCAGTA
  TGTAGCTATC GTAATCCTTT GTTCATAGGT AGGTGTGATA GATAACTCTT TGGGGGTTTG
  TTTTGTTAAG TTTGTTTGAT TGGTTGGTTG GTTGGTTGGT TGGTTGGTTG GTTGGTTGGT
  TGGTTGGTTC GTTGATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss51142161	NES14336219	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T	C	T
ss145098803	ENSMUSSNP4150383	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs37194441					SNP	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51142161	NES14336219	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:101690608 () rs orientation: forward

Symbol	Name	Function Class
Gm36475	predicted gene, 36475	within coordinates
Gm47533	predicted gene, 47533	within coordinates
Rr485081	regulatory region 485081	398 bp distal
Tssr4154	transcription start site region 4154	1877 bp upstream