rs37195627 SNP Detail

Summary

• ID
  rs37195627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30171397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACTCAGT CTGGAGCACC
  CAGGAAGGAA TGAAGCACCA TAAGAGAATA GCCCTGTCGG ATCAAGTGCC TGGCATGCCC
  GCCCTTTTGC CTACATCTTC CTCTTCTGTA ACTGGAGGGG ATGGAGAGCA GGAAACTGCT
  TACAGAGCCA AACACCCCTT CAGCATCCAG TTCTAGTCCG CTGAATGAGG CTCCTCCCTG
  Y
  GCTGCCTTGC CCCTCCTAAT TCAAATGCGG CAGGAAGAGA ATGCTGCGGT ACCCAGGCAG
  GGCCACACCC ATGGCCACAG CCAGAGTCCA CCCAACACAC AGCAGAGCAG GAATACCTAG
  ACCTTAGTTG AAGCAGAACC TGTCCTGGGT CAGAGGAAAA TAGGCTCTCC TGAAACGGGG
  ACAGTGGAGT TCTGCAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
ss51574683	NES14856879	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
rs37195627					SNP	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51574683	NES14856879	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30171397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	1518 bp proximal
Mir96	microRNA 96	1847 bp upstream
Mir183	microRNA 183	1661 bp upstream
Mirc35	microRNA cluster 35, including Mir182 through Mir183	1661 bp distal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Mirc40	micro RNA cluster 40, including Mir96 through Mir183	1661 bp distal
Rncr4	retina expressed non-coding RNA 4	1495 bp upstream
Rr146072	regulatory region 146072	996 bp distal
Rr146073	regulatory region 146073	3 bp proximal
Rr146074	regulatory region 146074	803 bp proximal
Tssr55327	transcription start site region 55327	1462 bp upstream