rs3719586 SNP Detail

Summary

• ID
  rs3719586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121126060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAA AGGGCACGGC AAGGCAGAAG
  R
  ATTAGGGGAT GCTGTGGTAG ATAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5095865	WI_WGS_2_122262044	WI	MOUSE	f	SNP			A	G
ss45298320	mCV23082179	ABI	CRAMUS_MOUSE	f	SNP	A	A		G	A
ss147383144	ENSMUSSNP985746	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			A
ss320482564	CHEV_2_121121315	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3719586					SNP	A	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121126060 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm14978	predicted gene 14978			within coordinates
Map1a	microtubule-associated protein 1 A			Intron
				Noncoding-Transcript-Variant
Rr373768	regulatory region 373768			281 bp downstream
Rr563799	regulatory region 563799			115 bp distal
Rr563800	regulatory region 563800			within coordinates
Rr563801	regulatory region 563801			419 bp proximal
Rr563802	regulatory region 563802			1927 bp proximal
Tssr19740	transcription start site region 19740			93 bp downstream