rs3719591 SNP Detail

Summary

• ID
  rs3719591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54390209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAT AACCAGACTT CATTGGATAG
  Y
  TCCATACCCA TAGTCACACA GATGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5095870	WI_WGS_14_45243303	WI	MOUSE	f	SNP	T			C
ss139556919	ENSMUSSNP3090319	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss324635149	CHEV_14_54772427	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3719591					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54390209 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Gm62807	predicted gene, 62807	401 bp upstream
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Tssr125542	transcription start site region 125542	394 bp upstream
Tssr125543	transcription start site region 125543	438 bp upstream
Tssr125544	transcription start site region 125544	454 bp upstream
Tssr125545	transcription start site region 125545	501 bp upstream
Tssr128540	transcription start site region 128540	1342 bp upstream