rs37195913 SNP Detail

Summary

• ID
  rs37195913
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131457120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGGTTAA TAAAGATAGC
  AAACTTGAGC ATTTTAAAAC ATAAGGAAGT AAAACTATAC ATAGAGCCTC TGCACCCCTT
  TGAAATATTT TGTGAATTTG CTTAGGTAGT CATCATTTAT TACCAAGGTA AATGAGGTGT
  TATTTTGTTT GTGTAGGTGC ACTTGTATAA CGAAATAGCA GTAGATAATA AAACCGTAAA
  W
  CCAAATGTCC CAAAGGTTCT ATGATCCCAA TGTTGTTTTA GTTAGATATG CTCACGTAAA
  AATCTGAAAT ATTCTATCTC TTCAACATAA AACTGTGGTC ATAAGGAAGT CTCAGGTTGG
  GTTGTTACAT GTTGGAGTCT AGCATAGAAT CAGGTTTTCT GTATTGCTTG TTTTTCTCTA
  TTGGAATTAT AATCACAGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368022	NES14475984	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37195913					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368022	NES14475984	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131457120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	741 bp distal
Fam72a	family with sequence similarity 72, member A	within coordinates
Gm70877	predicted gene, 70877	1694 bp downstream
Rr396286	regulatory region 396286	1799 bp downstream
Rr396287	regulatory region 396287	1489 bp downstream
Rr418132	regulatory region 418132	1469 bp distal
Rr418133	regulatory region 418133	1227 bp distal
Tssr8629	transcription start site region 8629	1511 bp downstream
Tssr8630	transcription start site region 8630	1471 bp downstream
Tssr8631	transcription start site region 8631	1380 bp downstream
Tssr8632	transcription start site region 8632	1006 bp downstream
Tssr13602	transcription start site region 13602	1997 bp upstream
Tssr13603	transcription start site region 13603	1842 bp upstream