rs3719616 SNP Detail

Summary

• ID
  rs3719616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71064125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCT GTGCCTCTGG CTCTCGGGGT
  R
  CGAAGTTCCC AAAGTAGAGT TACTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5095896	WI_WGS_8_70016920	WI	MOUSE	f	SNP	G					A
ss60632749	NES16282161	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G		G	G	G	G		A	A	G	A		G
ss322700624	CHEV_8_73135374	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3719616					SNP	G	A	G	G	G	A	G	G	G	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60632749	NES16282161	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71064125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20476	CpG island 20476	991 bp distal
Cpgi20477	CpG island 20477	within coordinates
Gm45546	predicted gene 45546	within coordinates
Gm63790	predicted gene, 63790	619 bp downstream
Rr400904	regulatory region 400904	330 bp downstream
Rr400905	regulatory region 400905	408 bp upstream
Rr664836	regulatory region 664836	1072 bp distal
Rr664837	regulatory region 664837	within coordinates
Rr664838	regulatory region 664838	525 bp distal
Rr664839	regulatory region 664839	134 bp proximal
Rr664840	regulatory region 664840	664 bp proximal
Tssr77777	transcription start site region 77777	1063 bp downstream
Tssr77778	transcription start site region 77778	757 bp downstream