rs37196165 SNP Detail

Summary

• ID
  rs37196165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26301318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGGAGAT CAAGGTGAGG
  AAAGCCCAAG TGTGGGCGGC AGGGAACCAA GCGAATGCAG TCCTGAACAG CAGGTGCTTA
  GCCTATCAGT GGCTGAGTCC AGGCTCCAAC TCCCTTGTGC TAGGTCCTGC AGAGGATTGG
  AAAAGACACG GTCATCACTC ATGAGCTGGC TGCGGCGGCA GCAGGCAACC TGGTGGGGCC
  Y
  CGAGACTTCG TGAGCGTGCG CTGTACCAAG CGCAGAGGTT CCACCTGTGT GCTGGCAGGC
  ATGGCCACAC ATTTTGGGGA GATGCCGGAG CAGAGTGGTG TCATCAGGTA AAACTTGGCG
  GCAGTCTCCA AACTGCAGTG TCATAATCTT GATCCCCACT TCCAAGCAAC CAATTCTTAG
  CCCCACACTC AGCTTTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50513587	NES14089074	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37196165					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50513587	NES14089074	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26301318 () rs orientation: forward

Symbol	Name	Function Class
Rr180623	regulatory region 180623	283 bp proximal
Rr189144	regulatory region 189144	683 bp proximal
Star	steroidogenic acute regulatory protein	within coordinates
Tssr76718	transcription start site region 76718	1416 bp downstream
Tssr76719	transcription start site region 76719	1684 bp upstream
Tssr76720	transcription start site region 76720	1746 bp upstream
Tssr76721	transcription start site region 76721	1762 bp upstream
Tssr76722	transcription start site region 76722	1798 bp upstream
Tssr80733	transcription start site region 80733	1680 bp downstream
Tssr80734	transcription start site region 80734	1873 bp downstream