rs37196174 SNP Detail

Summary

• ID
  rs37196174
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:125120367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAGATTC CTTGGAGATT ATTTTTCTCT CAAACCCAGA
  GCAAGAGCAG GCTGGGCCCT GGGATGGCGA GGATGACTCT ACTAATTGGA GCCCGTGTGT
  R
  TTCGGTCCAA ATATGTCTCT GGGCTCAGTC CTGTCCTGGA TGGTGGGCAA CTTTCATGAC
  CTCAGTGATG GGGGATGAGA TATGGGTACA GCCCTTGAAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51198404	NES13820259	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37196174					SNP	G	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51198404	NES13820259	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:125120367 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ncor2	nuclear receptor co-repressor 2			Intron
				Noncoding-Transcript-Variant
Rr620610	regulatory region 620610			1898 bp proximal
Tssr53394	transcription start site region 53394			485 bp upstream
Tssr53395	transcription start site region 53395			477 bp upstream
Tssr53396	transcription start site region 53396			253 bp upstream