rs3719619 SNP Detail

Summary

• ID
  rs3719619
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181167154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCAGGACAG CCAGAGAATA CACAGCAGTT GTACAGAGAA
  GCTTTGTCTC AACAAAATAA AACAAATCCA AAAAAGAGTA AGGCTAGGTT TGGGAGAGAT
  S
  ACTGAAAGTT CTTCCATAAG TTTCCTCTCC ACTAATTTGT ATGTGTTCTT TTATTTCATT
  CCATAATCAC TGTATGTTTT TCACAAGTGA CATTTAGTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5095899	WI_WGS_2_179856828	WI	MOUSE	f	SNP			C	G
ss45213986	mCV23780122	ABI	CRAMUS_MOUSE	f	SNP	G	C		G	C
ss148401709	ENSMUSSNP4188898	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs3719619					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181167154 () rs orientation: forward

Symbol	Name	Function Class
Dnajc5	DnaJ heat shock protein family (Hsp40) member C5	within coordinates
Rr573029	regulatory region 573029	174 bp proximal
Tssr22320	transcription start site region 22320	403 bp upstream