rs37196285 SNP Detail

Summary

• ID
  rs37196285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73971090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGCAGCCC CCACATGCCG AAATGATACC
  GATTCTCAAC TCTTCCCCTG ATCCCTATGG GCCTGACAAG CCATAAAATC CCTCTTGTTA
  ATAAAATGGA GTCTGTACTC CCTAACTCTC AGCTCTGTTA TGAATAGTGT GACATTGACC
  Y
  TGCAAGGCCT GTTTGACCTG ACTCTAGGCC ACGTGCACCA ACACCGGGCA CGGGTTCTGT
  GCACCAGTTT AATTGGCTTT TTTAAGTTTC TAGGGGGAAA CAAACAAGCT Ggggactagg
  gagatggctt catgggtgaa gagcttgctg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51276598	NES14517760	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	T	C		C
ss319792985	CHEV_1_73978505	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37196285					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276598	NES14517760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73971090 () rs orientation: forward

Symbol	Name	Function Class
Rr34544	regulatory region 34544	within coordinates
Rr371521	regulatory region 371521	374 bp upstream
Tns1	tensin 1	within coordinates
Tssr12218	transcription start site region 12218	1200 bp upstream
Tssr12219	transcription start site region 12219	1136 bp upstream
Tssr12220	transcription start site region 12220	1103 bp upstream