rs3719663 SNP Detail

Summary

• ID
  rs3719663
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118085567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAGTTGCC CCAACTGTTT TTTGGGGTTT GTTTGGGGTT
  TTTTTTTTGC CCCAAATGTT TTAGCTGGGA TTTTAATTGG AGAGCCAGGC TTGCATGGAA
  R
  CCCTACCAGC CTACCAGGAA CTGGGATAAA TGTTATCTGT GGCTGTATTT TGTTTTTTTT
  GTTTGTTTGT TTGTTTTTTT CTGCTGTTAT TCCTATAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5095943	WI_WGS_7_108126337	WI	MOUSE	f	SNP	G						A
ss45989485	mCV27568884	ABI	CRAMUS_MOUSE	f	SNP			G				A		G
ss47171622	NES11585847	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G		G	G	A	A	G	A	A	G	G
ss145780756	ENSMUSSNP625318	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3719663					SNP	?	G	G	A	A	G	A	G	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47171622	NES11585847	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118085567 () rs orientation: forward

Symbol	Name	Function Class
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	within coordinates
Rr654485	regulatory region 654485	1981 bp proximal
Tssr74438	transcription start site region 74438	687 bp upstream
Tssr74439	transcription start site region 74439	1192 bp downstream
Tssr74440	transcription start site region 74440	1909 bp downstream