rs37199475 SNP Detail

Summary

• ID
  rs37199475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164945818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATACACAGT CTTACCAGGC GGGCAGGCCT GGAACTTTCT
  GGGTTTATGA ACATGGCCTC CAGCTTGTGA TGCTCCTCCT GCTCTGTCTC CTGAGTGCTG
  Y
  ACACTGTGCC TAGTCTGGGT GCCTGAGGAC ACAGTCGTCT TCTGTCCCGG TCCTGGCTAG
  CTCCGGAGAG GAGAGTGCAA TGGCTTTCCT CAAGGATCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51403054	NES14459569	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	C	C	T	C	C	T	C
ss145994716	ENSMUSSNP1526647	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37199475					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51403054	NES14459569	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164945818 () rs orientation: forward

Symbol	Name	Function Class
Gm70481	predicted gene, 70481	816 bp upstream
Rr422319	regulatory region 422319	810 bp proximal
Rr422320	regulatory region 422320	1023 bp proximal