rs37201215 SNP Detail

Summary

• ID
  rs37201215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109682534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCTGCT TGTGTGTGTA
  CATATATGTG TTCAAGAGAG AGAGTGTGTG TGTGTGTGTG TGTGTGTGTG TTGGGGGGGG
  GCTACCATGG GCGTGACTTT CATTTTATGA TCCTGTATCT TTGCAGTAAA CAACGCCATC
  CTGGAGGATC CCCTGAATGT GAAGCTATAT CCCAAGCTGG GGCACATTTC TCCTGGTGGG
  Y
  GAGTGACAGG TCTCTCTAGC CCAGCATCAA GCCCACATCT GTCACTTATG GCATAGGCTT
  CGTTGTTCTT GCTCATCTCC ATGTCTGTTC AATTTTGCTT GTCTTCTGAG GATTCAAATC
  ATTGGCTGCT TCCCAGCACA AGTACCTGAC TAGGAGATGT ATTTCAGATA TGACATCTCC
  TTAGGGAAGG ACACCAGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51053005	NES14374690	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37201215					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51053005	NES14374690	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109682534 () rs orientation: forward

Symbol	Name	Function Class
B830012L14Rik	RIKEN cDNA B830012L14 gene	1545 bp downstream
Gm60279	predicted gene, 60279	218 bp upstream
Mir494	microRNA 494	698 bp downstream
Mir543	microRNA 543	1158 bp upstream
Mir666	microRNA 666	985 bp upstream
Mir679	microRNA 679	450 bp downstream
Mir1193	microRNA 1193	309 bp downstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc45	microRNA cluster 45, including Mir666 through Mir543	985 bp proximal