rs3720188 SNP Detail

Summary

• ID
  rs3720188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126153659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGATCAGGA TGATGTCCCC TTGCAAATCG TCCTAGAAGG
  AAGGCAGGAG CCAAAACGCT CCCAATCGCC TAGTTTTGAT GGGGCAGAGC CCAGGATGAA
  Y
  CCACCCAGTA CTGAAGAAAA CGGTTAGGAG ATTTAACTCA GATACAAATC TCAGGACTAG
  GGCCTGGGAT GCTGCCTCCA CCCCCACAAA GTAGGAAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5096473	WI_WGS_4_123593371	WI	MOUSE	f	SNP					T	C
ss37732489	NES09192011	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T		C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3720188					SNP	C	C	T	C	T	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37732489	NES09192011	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126153659 () rs orientation: forward

Symbol	Name	Function Class
Gm57069	predicted gene, 57069	1353 bp downstream
Rr398487	regulatory region 398487	within coordinates
Rr599659	regulatory region 599659	1902 bp distal
Rr599660	regulatory region 599660	within coordinates
Rr599661	regulatory region 599661	1969 bp proximal
Tssr38986	transcription start site region 38986	518 bp upstream