rs37202080 SNP Detail

Summary

• ID
  rs37202080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162952339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAGTGAGA AATTCTGCAT GGTAACCTCC TTCTTAAATA
  GAACAAGAAC AAAAATAGCC TAGTTCAACA ATCGTTTTCA ACACTTTTAA TATTGTTGAC
  Y
  TTGTTTTCTT TGATAGCTAT TGCTCTTGCC TAAAAGCTGC TTTTCATCTT ACCGTTATTT
  TTGCACTAAT AGTTGGATTC CCAGTTTCAG GTAGAAATGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51394906	NES14460308	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37202080					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51394906	NES14460308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162952339 () rs orientation: forward

Symbol	Name	Function Class
D1Mit314	DNA segment, Chr 1, Massachusetts Institute of Technology 314	1151 bp proximal
Rr372359	regulatory region 372359	1457 bp downstream
Rr422057	regulatory region 422057	1461 bp proximal