rs3720226 SNP Detail

Summary

• ID
  rs3720226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:41339421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCA AGTGCGTCAG AGACTTTGCT
  R
  GTACTAAACT ACCTTGTCCA GTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5096511	WI_WGS_8_40041700	WI	MOUSE	f	SNP	G							A
ss60601062	NES16305972	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	G	G		A	G	A	A		A
ss144674325	ENSMUSSNP4884374	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss322633442	CHEV_8_41971738	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3720226					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60601062	NES16305972	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41339421 () rs orientation: forward

Symbol	Name	Function Class
Rr662620	regulatory region 662620	612 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	within coordinates
Tssr76991	transcription start site region 76991	1719 bp downstream
Tssr76992	transcription start site region 76992	1545 bp downstream
Tssr76993	transcription start site region 76993	741 bp downstream
Tssr76994	transcription start site region 76994	231 bp upstream
Tssr76995	transcription start site region 76995	1468 bp upstream
Tssr76996	transcription start site region 76996	1523 bp upstream
Tssr76997	transcription start site region 76997	1632 bp upstream
Tssr81068	transcription start site region 81068	715 bp downstream