rs37202407 SNP Detail

Summary

• ID
  rs37202407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:59376038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTG GGATGGAGCT GGCTACACAG
  Y
  TAGGGATAGG AAGTGTTTGT GGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50898721	NES13494801	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	C	T	C	T	T		C		C	T	C		T
ss146571946	ENSMUSSNP5800419	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C					C
ss325874043	CHEV_19_59462096	CHEVERUD	SCREENING_POP	f	SNP												C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37202407					SNP	T	T	T	T	T	C	C	T	C	T	T	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50898721	NES13494801	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:59376038 () rs orientation: forward

Symbol	Name	Function Class
Gm33756	predicted gene, 33756	1857 bp upstream
Rr370546	regulatory region 370546	1617 bp upstream
Rr550620	regulatory region 550620	127 bp distal
Rr550621	regulatory region 550621	251 bp distal
Rr550622	regulatory region 550622	221 bp distal
Rr550623	regulatory region 550623	1070 bp proximal
Rr550624	regulatory region 550624	1371 bp proximal
Rr550625	regulatory region 550625	1784 bp proximal