rs37202451 SNP Detail

Summary

• ID
  rs37202451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73968000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGTACA ACCGACATGC
  CAAGCCCTGT ACAGAAGGGT TTCATACACA GTATCCCCCA CCTCGTGTTC ATTAGTGACA
  CAGAGGCCAT TTGACAAATG ATGAGACTGA GTCCTGAAGA TGACCAGGCA TGTTGGACCC
  AGGCTCCCAT GGCCTCAGAG GCGAGCCCTA TGCTAATTAG AACAAGGATC AGTGTTCTGG
  Y
  CTTCTCCAGG GACGTTATCA TATGAAGGAG GTGGATGTCA TTGCCACCAC CTAGGACCCT
  TGCCACCATC TTTGTTGCCT CAGAGAAACA AGATCTGAGC ACAAATGCCT AGCTGCCACA
  ACCACAAAAT TCACCAAAGC CAGCCAGGGA AATGCTGCCA ACCTGGGAGA GCCAGGCCCT
  GCAGCCCTTG AGGGCCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51276642	NES14517826	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37202451					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276642	NES14517826	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73968000 () rs orientation: forward

Symbol	Name	Function Class
Rr17335	regulatory region 17335	2000 bp distal
Rr34543	regulatory region 34543	1801 bp distal
Rr34544	regulatory region 34544	within coordinates
Tns1	tensin 1	within coordinates
Tssr117	transcription start site region 117	345 bp upstream
Tssr12216	transcription start site region 12216	312 bp upstream
Tssr12217	transcription start site region 12217	476 bp downstream
Tssr12218	transcription start site region 12218	1875 bp downstream
Tssr12219	transcription start site region 12219	1944 bp downstream
Tssr12220	transcription start site region 12220	1968 bp downstream