rs3720258 SNP Detail

Summary

• ID
  rs3720258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181167265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCCATAAG TTTCCTCTCC ACTAATTTGT ATGTGTTCTT
  TTATTTCATT CCATAATCAC TGTATGTTTT TCACAAGTGA CATTTAGTTT GCAGCAGAGA
  R
  CTTTATTTCT AGATATTTTG GACCCAACTA GTATTTTTAG ATTTTGTGAG ATAGTATGAA
  TTCTCGGTCG GTATTCCTTG AATTTGTGTA AGTGAAGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	NZW/LacJ
ss5096543	WI_WGS_2_179856939	WI	MOUSE	f	SNP				A	G
ss37850723	NES08688951	PERLEGEN	MM_PANEL2	f	SNP	G					A	G
ss45270938	mCV23780124	ABI	CRAMUS_MOUSE	f	SNP		G	A		G	A
ss148401718	ENSMUSSNP1879983	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	NZW/LacJ
rs3720258					SNP	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850723	NES08688951	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181167265 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajc5	DnaJ heat shock protein family (Hsp40) member C5			Intron
				Noncoding-Transcript-Variant
Rr573029	regulatory region 573029			63 bp proximal
Tssr22320	transcription start site region 22320			292 bp upstream