rs3720317 SNP Detail

Summary

• ID
  rs3720317
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:41339472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGC TAATGTCCAT TAAATGACGG
  W
  GAGGCAGAGG GAAGCAGAGT GTGTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5096602	WI_WGS_8_40041751	WI	MOUSE	f	SNP	A							T
ss60601061	NES16305973	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		T	A	A	A		T	A	T	T		T
ss144674331	ENSMUSSNP222129	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss322633443	CHEV_8_41971789	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3720317					SNP	A	A	A	A	A	A	A	T	T	A	A	A	A	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60601061	NES16305973	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41339472 () rs orientation: forward

Symbol	Name	Function Class
Rr662620	regulatory region 662620	561 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	within coordinates
Tssr76991	transcription start site region 76991	1770 bp downstream
Tssr76992	transcription start site region 76992	1596 bp downstream
Tssr76993	transcription start site region 76993	792 bp downstream
Tssr76994	transcription start site region 76994	180 bp upstream
Tssr76995	transcription start site region 76995	1417 bp upstream
Tssr76996	transcription start site region 76996	1472 bp upstream
Tssr76997	transcription start site region 76997	1581 bp upstream
Tssr76998	transcription start site region 76998	1966 bp upstream
Tssr81068	transcription start site region 81068	664 bp downstream