rs37203196 SNP Detail

Summary

• ID
  rs37203196
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162536778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTtgctgct gctgctgctg ctgctgctgc
  cactgttgct gTTTCATCTG CTCCTGGAAA ACCAAAATCA CACTTACTGA CATTTCTATT
  CTATAATTAA TTAGTGTAAC CGTATTTGAA AACAAAGGTG TTTGGGAAAT TTAAAGATAA
  R
  AACAATCAGC ACAGAGTTGG CAAAAGACCA AATAAGTTAC AGTAATTTCT TATAATTCAC
  ATAAGCATCT CATCATTTCC TAGAAGTAGA AGATGTGTCT ATGAGTAAAG CTTAAGACAA
  AAAAGACATG ATAGAGAAAG TCAACTAACT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51397212	NES14464324	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	A	A	A		G
ss320083511	CHEV_1_164639340	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37203196					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51397212	NES14464324	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162536778 () rs orientation: forward

Symbol	Name	Function Class
Prrc2c	proline-rich coiled-coil 2C	Intron
Tssr9722	transcription start site region 9722	1136 bp upstream
Tssr14643	transcription start site region 14643	1366 bp upstream
Tssr14644	transcription start site region 14644	379 bp downstream
Tssr14645	transcription start site region 14645	1207 bp downstream
Tssr14646	transcription start site region 14646	1249 bp downstream
Tssr14647	transcription start site region 14647	1293 bp downstream
Tssr14648	transcription start site region 14648	1542 bp downstream