rs37203480 SNP Detail

Summary

• ID
  rs37203480
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:92090794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCATATCC CATAGACTGA TAGACTTAAA AGCTCAAAGA
  CTTTGAACTC AAGGGAAAAT GAGCAGTGAT CCAGGAGAGA ATTGTTACAC CAAGGGATTA
  M
  AAACAAAACT GATCGAATTC AAACATCTCG GCAAGGGAAT GCTTTGGCAA AAATAATGGT
  ACAGTCTTTT CAGACTTTAC TTACAATAGA AGAAGTCAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50605103	NES14040977	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	C	C	A	A		A	A	A		C
ss145570266	ENSMUSSNP6795410	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						C
ss322791517	CHEV_8_93888065	CHEVERUD	SCREENING_POP	f	SNP												A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37203480					SNP	A	A	A	A	A	A	A	C	C	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605103	NES14040977	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92090794 () rs orientation: forward

Symbol	Name	Function Class
B130011D17Rik	RIKEN cDNA B130011D17 gene	1503 bp upstream
Fto	FTO alpha-ketoglutarate dependent dioxygenase	Intron
Rr667523	regulatory region 667523	637 bp distal
Rr667524	regulatory region 667524	137 bp proximal
Rr667525	regulatory region 667525	1468 bp proximal
Tssr78731	transcription start site region 78731	900 bp downstream