rs37204484 SNP Detail

Summary

• ID
  rs37204484
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTGTCC TGGAACTCAC
  TCTGTAGACC GGGCTGGCCT CGAACTCAGA AATCTGCCTG CCTCTGCCTC CCGAGTGCTG
  GGATAAAAGG TGTGCGCCAC CAACGCCCGG CTACCTCATT ATTTTTTAAT GTATAAATGA
  GCTTGAAAGT GTGTGTGGGG TGGTGCAGTG ACTCATTCTC TCCACTAGGG TTCAGTCAGG
  M
  CCAGCCTTTT CAGCCCCGTA ACTGTAGAGA TGCAGGTTAA CTTTTTTTTT CCCCTTCTAA
  TTACAAAACT ACTTTTAATA CTTTGAGGTA TGTCGCATAC CTCAAAACTG GGAAGAGTAA
  CCTCACTTTC CAGGAGTGGC CCAGGGTAAG AGAGGAAGGA AACACGAGAG GGACCTGCTG
  CAGACTTGCA AATGCCGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50948631	NES14143200	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37204484					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50948631	NES14143200	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	927 bp distal
Cpgi2388	CpG island 2388	98 bp proximal
Rr213664	regulatory region 213664	1951 bp proximal
Rr224447	regulatory region 224447	649 bp distal
Rr224448	regulatory region 224448	within coordinates
Rr402345	regulatory region 402345	970 bp downstream
Rr402346	regulatory region 402346	within coordinates
Spryd4	SPRY domain containing 4	1187 bp upstream
Tssr99849	transcription start site region 99849	1206 bp upstream
Tssr99850	transcription start site region 99850	1158 bp upstream