rs37205770 SNP Detail

Summary

• ID
  rs37205770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42173458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA AGAAAAAACT GTTTGGATCT
  Y
  AGGGCTTCCA GGCTTTGACA CAACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss52006414	NES15025799	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T	C	T	C		C	C	C	C
ss136379295	ENSMUSSNP2778801	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss322933967	CHEV_9_42070245	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs37205770					SNP	T	T	T	C	T	C	T	C	T	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52006414	NES15025799	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42173458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	1492 bp proximal
Rr677189	regulatory region 677189	1433 bp proximal
Sc5d	sterol-C5-desaturase	within coordinates
Tssr89017	transcription start site region 89017	21 bp upstream