rs37206813 SNP Detail

Summary

• ID
  rs37206813
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:123154289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATACGTTC CACCTCCCCA
  TACTCCACTA ACTCTTACTC CCTTTTACAC TCCCCACCCC ACCGCATTTT CCAAGAGCCT
  CAGCCTAGGG GTTGAGTGCC ACTCCCCACC CTCATTTTCT TCTCTAGAAA CTTGCCTCTG
  AGTCACTGGG TGTGGGGGAG GAGGGTGGGA CATGTTCCCC TTGAAAGGGC TCTTGCTTGA
  K
  GAAGAGGTAG GCATATTTTC CTCCCCTCAA GTCCCAAGAA GGTGGTACGA AGCCTCTGCA
  GGAGGCGCCC CTGGAGGCTG CAGGTTAGGC ACCAGACCTT AACTCTAGGA ATACCTTCAG
  GCTTGCCTGT CTTGGAGTTT GCCTGGAGCT GTTATTATCT TTCGATGACA TCAACCTACA
  TCAGTGGGGT CTGCCGCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51195026	NES13812883	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs37206813					SNP	T	T	T	T	T	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195026	NES13812883	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123154289 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm2479	predicted gene 2479			1272 bp upstream
Orai1	ORAI calcium release-activated calcium modulator 1			Intron
				Noncoding-Transcript-Variant
Rr399336	regulatory region 399336			1142 bp downstream
Rr620045	regulatory region 620045			1955 bp distal
Rr620047	regulatory region 620047			1142 bp distal
Rr620048	regulatory region 620048			809 bp distal
Rr620049	regulatory region 620049			1373 bp proximal
Tssr48743	transcription start site region 48743			1108 bp downstream
Tssr48744	transcription start site region 48744			1073 bp downstream
Tssr48745	transcription start site region 48745			927 bp downstream
Tssr48746	transcription start site region 48746			891 bp downstream
Tssr48747	transcription start site region 48747			3 bp upstream
Tssr53183	transcription start site region 53183			1363 bp upstream
Tssr53184	transcription start site region 53184			316 bp upstream
Tssr53185	transcription start site region 53185			269 bp upstream
Tssr53186	transcription start site region 53186			246 bp upstream
Tssr53187	transcription start site region 53187			1331 bp downstream