rs3720884 SNP Detail

Summary

• ID
  rs3720884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:41339538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTC CCCTGCAATA CCTTTGGGCG
  Y
  TCCTTAGAAC TCCCCAGAAA GAGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5097173	WI_WGS_8_40041817	WI	MOUSE	f	SNP	C			T
ss144674354	ENSMUSSNP41478	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss322633446	CHEV_8_41971855	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3720884					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41339538 () rs orientation: forward

Symbol	Name	Function Class
Rr662620	regulatory region 662620	495 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	within coordinates
Tssr76991	transcription start site region 76991	1836 bp downstream
Tssr76992	transcription start site region 76992	1662 bp downstream
Tssr76993	transcription start site region 76993	858 bp downstream
Tssr76994	transcription start site region 76994	114 bp upstream
Tssr76995	transcription start site region 76995	1351 bp upstream
Tssr76996	transcription start site region 76996	1406 bp upstream
Tssr76997	transcription start site region 76997	1515 bp upstream
Tssr76998	transcription start site region 76998	1900 bp upstream
Tssr81068	transcription start site region 81068	598 bp downstream