rs3721160 SNP Detail

Summary

• ID
  rs3721160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:73955387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGGGCTC CCCCGCGGTC
  CACGTCGCCA TCTTGGCGCT GGGGGTGGGA GTCGCGGGCC CTGCGCTCGG CGGGGCTGGG
  GTCTCCGCCC CGGACACCCG CCCCGCGCCG TCGCAGCCCA GCCTGCCCCG CGCGCCCATC
  CGGCCGAGCC GGCCAGGGCC GAGTACGCCT CTAGCTCCCG CGCCTTCCCT CCCCGTCCTC
  Y
  GCGTTAGCCG CGAGCAGCGG GCCCCGGGCG GACCCTGTGC GCGCTGCCAG CTTCCTGGGG
  TCGAGGCCCT CCGAGGCCGA CCCGGGGCTC CCCCGAGCCG CCTCGCTGCG CCGCGGCCGC
  CGTTGCCTTT GTAGGTTAGG GAGTTTCTTC TGGGGGCCCG AAGACGCTAA CTTTCTAGTT
  TGCACGTGCG GGTTTGGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss5097453	WI_WGS_12_68565559	WI	MOUSE	f	SNP	T		C
ss38989072	mCV24197684	ABI	CRAMUS_MOUSE	f	SNP		T	C	C
ss137890812	ENSMUSSNP2678093	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs3721160					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73955387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4761	CpG island 4761	within coordinates
Gm20235	predicted gene, 20235	1942 bp upstream
Hif1a	hypoxia inducible factor 1, alpha subunit	Intron
Rr467871	regulatory region 467871	699 bp distal
Rr467872	regulatory region 467872	within coordinates
Rr467873	regulatory region 467873	622 bp distal
Rr467874	regulatory region 467874	601 bp proximal
Tssr113838	transcription start site region 113838	643 bp downstream
Tssr113839	transcription start site region 113839	598 bp downstream
Tssr113840	transcription start site region 113840	547 bp downstream
Tssr113841	transcription start site region 113841	443 bp downstream
Tssr113842	transcription start site region 113842	377 bp downstream
Tssr113843	transcription start site region 113843	232 bp downstream
Tssr113844	transcription start site region 113844	999 bp upstream
Tssr113845	transcription start site region 113845	1472 bp upstream