rs37211731 SNP Detail

Summary

• ID
  rs37211731
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:42773055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGACAAAT CTGGGCCCCA
  CGCCATGAAA AATGTGAGTC TGTCCTTGAC TTCAGTGGCA AACGAGGCGT GAAAACGTAT
  CAAAATGTGA TATTCAATAT ATGGATGTAT TTAATATTTT ATGAGACTGG AAATCAGTTA
  CTGGAGGTTT GAAGGATAAA TCAAGCACCA AGCAGACGAA CTTTCAGGCA TCTGTCCTGA
  Y
  GTGTGCTTTT CCCAGGAGGA GGGAAAGAAG AAAGGCCTCA CCGCTGCCCC CCCCCCCCCA
  CAATCCCTCC TAATCCATGA CTACCCTGCC TGCCTGCAGA GCTCCACTCA CCCTGTGAAA
  GCCTGCTGGC TTCCTTGGAG CACACTCTAG AAAGTTTCCT TACGACCACA CCCTTAAGAC
  CTTAAGACCA CACCCTAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52008980	NES15031333	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C		T	C	C	T		C
ss322936118	CHEV_9_42669842	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37211731					SNP	C	C	C	C	C	T	C	C	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52008980	NES15031333	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42773055 () rs orientation: forward

Symbol	Name	Function Class
Gm55338	predicted gene, 55338	292 bp downstream
Gm67530	predicted gene, 67530	within coordinates
Grik4	glutamate receptor, ionotropic, kainate 4	Intron
Rr677285	regulatory region 677285	1185 bp distal
Rr677286	regulatory region 677286	230 bp distal
Rr677287	regulatory region 677287	1643 bp proximal