rs3721195 SNP Detail

Summary

• ID
  rs3721195
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77829106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCGGTTCG AGTAAAGCAC
  ACGTGTACTA GCTAGTGTTG ACGTTTGGAA AGGCATGGGC ATTGGTGGGT AAAACTGGCT
  GCGTTGTCCC TTATCTTCAC CTGCTATCAA CATGAGAAAT TAGTTTTGAG CCCTGGTGTC
  TGTCTGTCTG TTTGTCTCTC TCTCTACCCC TTCCTCCCCC ATTAAAGATG AAAGGTTAAC
  W
  TTTCTTAGTT TCAGTTTTGC CAAGAATAAA CCCTTTGTTT CTGTTTGGCA GTGGATTGAG
  AATGAAAGTT GAGATCTCTT AGGTCTCAGC AGGACAACTG GTGGGGGGAT TGAAGCAGTG
  GAAGCAAACT GCTGCTCTTC TGACTTTCGG AGCTTGGATC TAGGAGATGT TTCAGCCTAG
  GGAAGCAACT TGTTAAGGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5097488	WI_WGS_9_78653269	WI	MOUSE	f	SNP	T			A
ss136662637	ENSMUSSNP5620093	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3721195					SNP	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77829106 () rs orientation: forward

Symbol	Name	Function Class
Elovl5	ELOVL fatty acid elongase 5	within coordinates
Rr683431	regulatory region 683431	within coordinates
Tssr86219	transcription start site region 86219	1637 bp downstream
Tssr86220	transcription start site region 86220	1421 bp downstream
Tssr86221	transcription start site region 86221	343 bp downstream
Tssr86222	transcription start site region 86222	324 bp downstream
Tssr86223	transcription start site region 86223	297 bp downstream
Tssr86224	transcription start site region 86224	78 bp downstream
Tssr86225	transcription start site region 86225	84 bp upstream
Tssr86226	transcription start site region 86226	1444 bp upstream
Tssr86227	transcription start site region 86227	1493 bp upstream
Tssr86228	transcription start site region 86228	1841 bp upstream
Tssr86229	transcription start site region 86229	1888 bp upstream