rs37212096 SNP Detail

Summary

• ID
  rs37212096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66591654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTCCTCCT TGCGCCCTCC
  GCCGTAGGTC GGCGCCGCGG CGATCTGAGG CTTGCCCCGG CAAGTTGCGC TCGGGGGCGT
  CTCGAGACCT GCTCCACTTC GCTCGGTTCC CGCGCCGCCG CCGTTCGAAG GGGCGGGGAC
  ACGGGCGGGA TGTCGTCACA TGACGTCACC GGAGAAGTCC CGATAAAATG CGAGAGCCGG
  Y
  CTGGGGCGCC TGAACAGAGA GGATTCCAGC GCTGGTGCTG CCTACTGAAG CTCGGTGCGT
  CTGGCTCGCG GCACTCGCGA TTCATCTTGC GCAGCCCGAG TCTTGGGGGA GCCCCAGAGC
  CCAGATTGGG GACCTTAGTC TCCCGTGCGC AGCGGAGATC GCCGCGGCGT TTCTGAGATG
  CCCGGGAGAA AGGCGCGTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50450328	NES13440895	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37212096					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50450328	NES13440895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66591654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	within coordinates
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	21 bp upstream
Rr405709	regulatory region 405709	within coordinates
Rr539737	regulatory region 539737	within coordinates
Rr539738	regulatory region 539738	171 bp distal
Rr539739	regulatory region 539739	117 bp distal
Rr539740	regulatory region 539740	21 bp proximal
Tssr151705	transcription start site region 151705	4 bp upstream