rs37212652 SNP Detail

Summary

• ID
  rs37212652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18708767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATAAGGTC CTGCAGCCAG GTGTCTGCAG CTGGGGAGCT
  CGAACAAACG TCCACAGGAA TGTTAATCAT TTTCTCACCA CAGGACCTTA GTCACAGGTT
  Y
  CTGGTAAAAG TGAAATCGGA CCCTCTGGTT TAAGCGAAGC TAAATGTTTT CAGTCAGTGA
  ACATTGCGTT TCTCCCTTCT AGATTAAGCA CCTGGGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss50685046	NES13607315	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	T	T	C	C		T	T		C
ss146149688	ENSMUSSNP1980840	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss325733602	CHEV_19_18805893	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs37212652					SNP	C	T	T	C	T	T	T	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685046	NES13607315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18708767 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	1338 bp upstream
Gm50202	predicted gene, 50202	470 bp downstream
Gm59201	predicted gene, 59201	38 bp upstream
Tssr155454	transcription start site region 155454	786 bp downstream
Tssr155455	transcription start site region 155455	754 bp downstream
Tssr155456	transcription start site region 155456	714 bp downstream
Tssr155457	transcription start site region 155457	26 bp upstream
Tssr155458	transcription start site region 155458	1337 bp upstream