rs37214809 SNP Detail

Summary

• ID
  rs37214809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30172171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTGCCTC TTCCCCCTGC
  CCCCCCCCCC CAGCCTACCA TTCTCAGTAC CAGAGCTCCC TAGAGGTGAG TGGTTCGGGT
  GGAGTCTTTA GGGATCTTTT GCTAACATTC AGCAACTGTC ACCATCAACC CCTACACATC
  GAATCTAGAG TCTCTGTTGC GAATCTTCCC ACCAGCGATT GGCCCAGCAC GGATCACTTA
  Y
  ATCTCCATCG AATGCTGCAA AGGCTGGGGC GGCTAGCCTC TCCACTAGCT CAGGGCGTGG
  CCCAGCCTCC TGGTTGGCTA GTGAAATCTT AGGAGCCCCT CAAGCTGCTT TTGATGCAGT
  CCAAGCTACC CAGGCATGCA CCAAACTCGA GTGTGCTCAG CTGTGCACAG CACAAGCACG
  TTCCCAGGGC CACTGGACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51574668	NES14856884	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37214809					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51574668	NES14856884	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30172171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	744 bp proximal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Rncr4	retina expressed non-coding RNA 4	721 bp upstream
Rr146072	regulatory region 146072	1770 bp distal
Rr146073	regulatory region 146073	170 bp distal
Rr146074	regulatory region 146074	29 bp proximal
Tssr55327	transcription start site region 55327	688 bp upstream
Tssr60107	transcription start site region 60107	1904 bp downstream
Tssr60108	transcription start site region 60108	1928 bp downstream
Tssr60109	transcription start site region 60109	1945 bp downstream