rs37215449 SNP Detail

Summary

• ID
  rs37215449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:127385225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGGAG ACAAGAGACA
  GAGGTCGGGG AAGGAAGGGA GGGAGGAAGT GCTGCAAGTA GGCACAGTGA TGGATCAAGA
  GAAAGGGCAA GGGGACATGG TGAGGTGTGT GAAAGACTGT CTGTGGGCAG AAGCTTCTGA
  GTGGAGATGC TGAGTTCTCT CTACCTAGGC TGCGCTTATT CAACTCTTAG AGATGCTATG
  Y
  GACCTTCATA CATGTGCTCC ATTGTGCTGT CACAGGTAAT GAGTACATAG GAACTAAGGG
  AAAATTGCTT ACTGACAGCT GATAGAAAAC TGTTATTTCA GTGTTTCAAG GACATACGTC
  AGTGCATGTC ACCTTAACTA GTGTGACAAG AAAACTCATT GCTAAGAAAT GGTGTGGCGT
  TTGCTTAAGA GTCCTTGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51358152	NES14484477	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37215449					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51358152	NES14484477	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127385225 () rs orientation: forward

Symbol	Name	Function Class
Gm41947	predicted gene, 41947	within coordinates
Mgat5	mannoside acetylglucosaminyltransferase 5	within coordinates
Rr11973	regulatory region 11973	1376 bp proximal
Rr19047	regulatory region 19047	225 bp distal
Rr30263	regulatory region 30263	377 bp proximal
Rr396245	regulatory region 396245	1529 bp upstream