rs37216285 SNP Detail

Summary

• ID
  rs37216285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123798447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTGCCC GCCTCAGCCA
  CACCTGACCT ACTTTTTTCT TATTAGCTTT ACTGCCCCCT CCCTGTATAT AAGTGTGCAG
  GTGCGCGTGG AAACCAAAAG AGCATAATGC GCCCTAGGTG TGGTGGAGCT GCCCAAACTC
  CAGCCCCCTG CATGAGTGAC AAAAGTTCTT AACCCTGGAA CCCTGTCTCT AGGCACTCCA
  Y
  GTTAAATGTA ATGCTTCAGT CACATCCAAA TGTACGATTA ACTAGCGACA GTGCCAGAGA
  CACAACAATT CCAATCACTA CACACAGGGC AGATAGTCCT ATCAGACAAC ACTATCCTGC
  AACTTCCTCC ATCCAAGGGT ACTCTTCTTG CCAAAGACTT GATCTCATTT AAAGTGACTG
  CCCAAGTGGC AGGAGAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51811290	NES14718017	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37216285					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51811290	NES14718017	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123798447 () rs orientation: forward

Symbol	Name	Function Class
Clip1	CAP-GLY domain containing linker protein 1	within coordinates
Rr620238	regulatory region 620238	1025 bp proximal
Tssr48802	transcription start site region 48802	1841 bp upstream
Tssr53252	transcription start site region 53252	1267 bp downstream
Tssr53253	transcription start site region 53253	1280 bp downstream