rs37216663 SNP Detail

Summary

• ID
  rs37216663
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99164720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGAAGG AAGGAAGGGG
  ACAACTGAAA ATAACAGAAA GAGGATGTGA AAATTTTTCA GTGAGGAATG GCTCACAAAA
  GCCTTCTTCA GATGTCATGT GGAAGATCCA AAAAACATTT TGACTTCAGA AACAAAGACT
  GGCTTTACAG GTTCGACTTG TCATAGCCCA CGTTTTAGAG GGCACTAGGG AGAAAGGAGT
  W
  GAGGACAAAG TTACAAGCCC TGACTGACAT CTGTCTTTAA TGGGTCCATG CCTAAGACAT
  CAGGACTCTG AGCAGATCTT GGCAGCCTGG ACGCCTTTGG AGAAAAGTTA CCATTTTGTA
  TTGATTTTAA TCTTACCTGG AACCTTGGGC TGGTGGGGGG AGACATGAGT CACATGCATC
  CTCTGGGGTC TCAAGGAATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51782548	NES14787149	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37216663					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51782548	NES14787149	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99164720 () rs orientation: forward

Symbol	Name	Function Class
Foxp1	forkhead box P1	within coordinates
Rr399787	regulatory region 399787	827 bp upstream
Rr406447	regulatory region 406447	1898 bp proximal
Rr635365	regulatory region 635365	314 bp proximal
Tssr57967	transcription start site region 57967	1323 bp upstream