rs37217741 SNP Detail

Summary

• ID
  rs37217741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:47447268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAACAG AGTTGCCTGT
  TAGGCTTTTC TGGCCAAGGA CTCTGTGACT CAGGATGAGG AAATTAGAAG GCAATTTCCA
  GGGATGGCCA GGCAAACCCT AAGTCAGAAG TTCCCCAGCA TCCATCCCCT AGTCCACAGC
  CCCCACTGCC CATTAACTCA GCTGGCCCCA GAATAGCTCT TTGGAAAACG CAATAGCCGG
  Y
  GCTCATATTT CTGAAGCTGG AGCCGGTCTT ACTTGACATC AAATAGGTTT ATTTTTCCCT
  TCCCTTCCCC TCCGCCTGCC ACCACACACG GTGACTCCAA CCCTGGCTTG CCCTCTCCCC
  TCAAAATATC CCTCACACTC AACCCTGAAC AGAGTGAGCC ATGAGGGACG GCTGGCTCTG
  CTCCCTGTCC CAACGGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50859992	NES13511650	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37217741					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50859992	NES13511650	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47447268 () rs orientation: forward

Symbol	Name	Function Class
Gm52384	predicted gene, 52384	within coordinates
Rr549060	regulatory region 549060	within coordinates
Rr549061	regulatory region 549061	1360 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	Intron
Tssr159729	transcription start site region 159729	1779 bp downstream
Tssr159730	transcription start site region 159730	1929 bp downstream