rs3721844 SNP Detail

Summary

• ID
  rs3721844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:73955510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCC TCGCTGCGCC GCGGCCGCCG
  Y
  TGCCTTTGTA GGTTAGGGAG TTTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss5098140	WI_WGS_12_68565682	WI	MOUSE	f	SNP	C		T
ss39001443	mCV24197680	ABI	CRAMUS_MOUSE	f	SNP		C	T
ss137890815	ENSMUSSNP4397857	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss324099230	CHEV_12_75009723	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs3721844					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73955510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4761	CpG island 4761	within coordinates
Gm20235	predicted gene, 20235	1819 bp upstream
Hif1a	hypoxia inducible factor 1, alpha subunit	Intron
Rr467871	regulatory region 467871	822 bp distal
Rr467872	regulatory region 467872	within coordinates
Rr467873	regulatory region 467873	745 bp distal
Rr467874	regulatory region 467874	478 bp proximal
Tssr113838	transcription start site region 113838	766 bp downstream
Tssr113839	transcription start site region 113839	721 bp downstream
Tssr113840	transcription start site region 113840	670 bp downstream
Tssr113841	transcription start site region 113841	566 bp downstream
Tssr113842	transcription start site region 113842	500 bp downstream
Tssr113843	transcription start site region 113843	355 bp downstream
Tssr113844	transcription start site region 113844	876 bp upstream
Tssr113845	transcription start site region 113845	1349 bp upstream