rs3721878 SNP Detail

Summary

• ID
  rs3721878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:4026257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG CACAGAGCAA AAAACACGTG
  Y
  TCTGTGTCTT CGGTACTTGT GTAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5098174	WI_WGS_15_3821781	WI	MOUSE	f	SNP	T			C
ss39414426	mCV23812961	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss147038885	ENSMUSSNP1222048	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3721878					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:4026257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6911	CpG island 6911	482 bp distal
Gm2093	predicted gene 2093	within coordinates
Rimoc1	RAB7A interacting MON1-CCZ1 complex subunit 1	1031 bp upstream
Rr369897	regulatory region 369897	within coordinates
Rr498628	regulatory region 498628	1042 bp distal
Rr498629	regulatory region 498629	728 bp distal
Rr498630	regulatory region 498630	within coordinates
Tssr133595	transcription start site region 133595	1530 bp upstream
Tssr133596	transcription start site region 133596	1015 bp upstream