rs37221443 SNP Detail

Summary

• ID
  rs37221443
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92423691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCCAT TGCAGGAAGA
  TTTAACTACG AGCTTCTTGA ACGCGGTCAA TTTGATTCTT TCTTCATTTT TAAGCATACA
  CGGAGTGTGT GAGACAAAGT TGTCAAAACT TTCACCCCTG CACAACTCAG TTTAAATCCT
  GGGACTAAAA GTGTAAAAAC CAGAGGACAA ATGACTTTGC ATAGACATAC TAATCAAAAC
  S
  CAAAGCAGTG GAGGTAGCTC CCAGGAGACC AGGAATGGCT CCTCTACATC TTCGGAAGTA
  ATTTTCCATG TGCCTGGCAG GGCGATCTTG TTAAAGCACA GCCTCAGGTT GCCCAAGCTG
  GGCTTGGACT CCGTCGGGTT TACAAGCTTC ATTACTGGAA AGAGTCTATG GCTCTCCTGG
  CACCAGCAGC GGCAGAGATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss52036451	NES15053655	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C		G	G
ss323074147	CHEV_9_92436476	CHEVERUD	SCREENING_POP	f	SNP					G			C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs37221443					SNP	C	G	C	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036451	NES15053655	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92423691 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	219 bp proximal
Gm37545	predicted gene, 37545	1555 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	585 bp upstream
Rr684632	regulatory region 684632	95 bp proximal
Rr684633	regulatory region 684633	1280 bp proximal
Rr684634	regulatory region 684634	1407 bp proximal
Tssr86520	transcription start site region 86520	617 bp upstream
Tssr86521	transcription start site region 86521	792 bp upstream