rs37222875 SNP Detail

Summary

• ID
  rs37222875
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:41019373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACACAAT CCAATATTTC
  AACTCGTTTT TGAGTATAAC TAATCTGTTA GCCTTATGTA CAGTGTTAGC TTTAAAAGAG
  AAAGAGATTA GATAGGTAAA GGGGGAGGGA TAAAACAGAA AAAACATCTT CAAAGAGAAA
  GTTAAAAACA GAAATCAAAA GTTTTAGCAG CTACCAAGAT GCTTTTCATG GTAAAGGAAC
  K
  GAACAGGGAC CAGTCAGGAA AGGGAGAGCC ATCAGGCAGG GTGCCACTCA CTCAGAAAGC
  TCTCTGATAA AAGGTCCATA CATCTGTTGG AGGCCCATGG ACTGAGTCAC CAATGGAGCA
  AATGAGCCGA GGCAAGTGTC AGGGGTGATG ATGATCACGA AGCAAGTATC TTTGCTGGAG
  AGGTGAATCA GAGTGGTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50828474	NES13536830	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37222875					SNP	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828474	NES13536830	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41019373 () rs orientation: forward

Symbol	Name	Function Class
Dntt	deoxynucleotidyltransferase, terminal	within coordinates
Rr365008	regulatory region 365008	773 bp distal
Rr365009	regulatory region 365009	173 bp distal
Rr370496	regulatory region 370496	1510 bp downstream
Rr370497	regulatory region 370497	197 bp upstream
Tssr5510	transcription start site region 5510	277 bp downstream
Tssr156412	transcription start site region 156412	1536 bp downstream
Tssr159242	transcription start site region 159242	188 bp downstream
Tssr159243	transcription start site region 159243	218 bp downstream
Tssr159244	transcription start site region 159244	239 bp downstream
Tssr159245	transcription start site region 159245	248 bp downstream
Tssr159246	transcription start site region 159246	1110 bp downstream
Tssr159247	transcription start site region 159247	1124 bp downstream