rs37224759 SNP Detail

Summary

• ID
  rs37224759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46655540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG TATTTGGAGC TGCCGGAAGC
  Y
  GCGGGCGACT CTCCCCGAGA GCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51103921	NES14353418	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C	C	C	C	C	C	C	T	T	T
ss148973601	ENSMUSSNP188055	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37224759					SNP	C	C	C	T	C	C	C	C	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51103921	NES14353418	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46655540 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	within coordinates
Cpgi5539	CpG island 5539	within coordinates
Gm35110	predicted gene, 35110	139 bp upstream
Gm61509	predicted gene, 61509	831 bp upstream
Rr478915	regulatory region 478915	206 bp distal
Rr478916	regulatory region 478916	105 bp distal
Rr478917	regulatory region 478917	within coordinates
Rr478918	regulatory region 478918	341 bp proximal
Rr478919	regulatory region 478919	852 bp proximal
Tssr119597	transcription start site region 119597	179 bp downstream
Tssr119598	transcription start site region 119598	148 bp downstream
Tssr119599	transcription start site region 119599	16 bp downstream
Tssr119600	transcription start site region 119600	within coordinates
Tssr119601	transcription start site region 119601	49 bp upstream
Tssr119602	transcription start site region 119602	77 bp upstream
Tssr119603	transcription start site region 119603	825 bp upstream
Tssr122343	transcription start site region 122343	723 bp downstream