rs37225474 SNP Detail

Summary

• ID
  rs37225474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127763526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCCCCT CACTGATTTT
  ATCTCCACTT TCAGTTAACC CAGCTCTGGT CTCCTTAGAT TAGAATCTAA AAAAATAATA
  GCCGAAGGGA AGTGGGGGAA GCCACACACA ACAGATAGAC TCAGTTTTCC AGTCATACAC
  TTGGTCGTAA TGTTCTTGTC AGAGTTGAAC TTGTTTATGT GTGCTCCTTA AACGCCAATG
  Y
  CAGAGCCCCA ATCAGAGATG CAGAAAACAA GACAAGCAAG GCCTGTTAAA AGCAGGTGCG
  TATTATATGT GTATATTGGG GAGCGTTTAT TTCCTTATTG GATTTTCAGT GGCCGTTGTG
  AACACAGTGA AAAGCACGTC TCTAATGTGA CTTTGGAGGA ATCCCATTTC TTCATTAACT
  GAGCATTGAG AACAAAATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51616709	NES14661306	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37225474					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616709	NES14661306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127763526 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	1044 bp upstream
Gm65460	predicted gene, 65460	758 bp upstream
Rr52	regulatory region 52	104 bp proximal
Rr584913	regulatory region 584913	1097 bp proximal
Rr584914	regulatory region 584914	1197 bp proximal