rs37225557 SNP Detail

Summary

• ID
  rs37225557
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117232886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTGCTC ACTCGCAGTT
  TGCTCGCTCC AGCTCAGTGA CTCTCAAATC TGTAACTGCA CAAGAGTGCA CCATGGCCCA
  TACAGAACTG CAGGACCCGG CTCAGGCAGG CAGAGAGGCT CAAGGGTACT GCTGACGGTT
  TCCCCACATA GTGCTGACAC CCCATCCCCC ACCCCAGGAG ACAGGATCGC ACTGCACTTC
  M
  CGGTCAGGCT TTTTATCAAG TCTGTTATAC TTTCAACACT TCTCAGAGCC ATTTGCTCTC
  GTGCTCGGGG AAGAGATCGG ACGCCTACCT CGTTGGCTCC CACTGAGCTG ATCACACAGC
  TCAGCTTCTG GTTGTCCTTA GATTCCAGGT AGATGGCCTG GCTCTTGTGG TACCTGCCAA
  AACCAGGACA CAAACAAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51186328	NES13827115	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37225557					SNP	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51186328	NES13827115	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117232886 () rs orientation: forward

Symbol	Name	Function Class
Rr618554	regulatory region 618554	60 bp distal
Rr618555	regulatory region 618555	197 bp distal
Rr618556	regulatory region 618556	1576 bp proximal
Rr618557	regulatory region 618557	1941 bp proximal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	Intron