rs37226319 SNP Detail

Summary

• ID
  rs37226319
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:25276006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTTCTTAT TCGTATCCAT AGTAATTTTT GCTTCACCTG
  TCAGTAACAC TCTGTGGCTG AAAGTCAGCG TCCCCACATT CTTGATACGG CCGCTCTATC
  W
  GTGTCTCTGC CCTTTGTGCG TTGTGCTTGG ACTTTAATAT GAGTATTCCA CTCGCTGGGA
  AGTCTGAAGA GCCATTGTGT AGCTGAGTGA CATTGTGTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss50736069	NES13577725	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	A	A	A
ss146282403	ENSMUSSNP1055764	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs37226319					SNP	A	T	T	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50736069	NES13577725	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:25276006 () rs orientation: forward

Symbol	Name	Function Class
Kank1	KN motif and ankyrin repeat domains 1	within coordinates
Rr364351	regulatory region 364351	1807 bp distal
Rr364352	regulatory region 364352	1016 bp distal
Rr364353	regulatory region 364353	1796 bp proximal
Tssr155675	transcription start site region 155675	1928 bp upstream
Tssr155676	transcription start site region 155676	1944 bp upstream