rs3722740 SNP Detail

Summary

• ID
  rs3722740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171576685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTT ATGTTCCTTG CTCCCAATTA
  Y
  GCCCCAAAGT TTTTTCTACT TCTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5099044	WI_WGS_1_173032091	WI	MOUSE	f	SNP					C			T
ss45113119	mCV24403616	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss49748736	NES13032874	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	C	C		T	C	C	C		C
ss120002650	PARCsnp_1.15402	PARC_SEQ	INBRED	f	SNP								T		C
ss120005026	PARCsnp_1.04781	PARC_SEQ	INBRED	f	SNP								T		C
ss146173633	ENSMUSSNP2799880	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320120649	CHEV_1_173679248	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3722740					SNP	C	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748736	NES13032874	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171576685 () rs orientation: forward

Symbol	Name	Function Class
Rr423388	regulatory region 423388	197 bp distal