rs37227734 SNP Detail

Summary

• ID
  rs37227734
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5898906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCGGCGG CGGCGGGTCG
  GAGGGTGCTC TGAGGACCAG ATGTAAGCAG AAGGGATTTG AGGGGGTGTC CTCAGACAGC
  AGGAGGGTGC TCAGGTGTGG ACCCCTGCCT TTCCTGGGCA TTAGGTGGGC TCTGTGTGCT
  TCTTGTCTCA GAAGCCTTTG GCTGGTGTCC TGGGCGTGTG AAGAACTTCA GCCAGACTTC
  R
  GGCCGTGACT TGCAGAATGC AACAGAGATG GTATCAGCCC CCATCCAAAG CTCCCAGGGC
  TGTGTTTCTG ATTTATCCCC GTACTTTGCT GAGCACTTAG CCTGGCCCTG GCCCTAGGGT
  CTTGGATTCC CGGCTTCTTT GTCCCTCCCC TTCCCGGACC TTTCCCTGAG CTCACCTTTC
  TGACACCATT TCCTCTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50577070	NES13648179	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37227734					SNP	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577070	NES13648179	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5898906 () rs orientation: forward

Symbol	Name	Function Class
Frmd8os	FERM domain containing 8, opposite strand	within coordinates
Gm59609	predicted gene, 59609	464 bp upstream
Gm59610	predicted gene, 59610	within coordinates
Rr370436	regulatory region 370436	within coordinates
Tssr154517	transcription start site region 154517	1992 bp downstream
Tssr154518	transcription start site region 154518	1968 bp downstream
Tssr154519	transcription start site region 154519	1889 bp downstream
Tssr154520	transcription start site region 154520	356 bp downstream
Tssr154521	transcription start site region 154521	210 bp downstream
Tssr157783	transcription start site region 157783	754 bp upstream
Tssr157784	transcription start site region 157784	1065 bp downstream
Tssr157785	transcription start site region 157785	1126 bp downstream